Appendix 2I: Occupancy data for Hochstetter's frogs in 15 transects surveyed in 2012, 2015 and 2021

These data show whether one or more frogs was detected in each 10-m segment of each transect
in each survey each year.

list(

n.transects=15,			# no. of transects
n.transect.years=45,	# no. transect-years, i.e., 15 transects in three different years
n.segments=450,		# no. of rows of data, where each transect divided into 10 segments
n.surveys=3,				# maximum number of surveys per transect each year

# the year corresponding to each row in the "detected" matrix below
year=c(2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2012,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2015,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021,2021),

# the transect corresponding to each row in the "detected" matrix below
# transects numbered in following order: A1, A2, A3, A4, B1, B2, B3, B4, C1, C2, C3, D1, D2, E1, E2
transect=c(1,1,1,1,1,1,1,1,1,1,2,2,2,2,2,2,2,2,2,2,3,3,3,3,3,3,3,3,3,3,4,4,4,4,4,4,4,4,4,4,5,5,5,5,5,5,5,5,5,5,6,6,6,6,6,6,6,6,6,6,7,7,7,7,7,7,7,7,7,7,8,8,8,8,8,8,8,8,8,8,9,9,9,9,9,9,9,9,9,9,10,10,10,10,10,10,10,10,10,10,11,11,11,11,11,11,11,11,11,11,12,12,12,12,12,12,12,12,12,12,13,13,13,13,13,13,13,13,13,13,14,14,14,14,14,14,14,14,14,14,15,15,15,15,15,15,15,15,15,15,1,1,1,1,1,1,1,1,1,1,2,2,2,2,2,2,2,2,2,2,3,3,3,3,3,3,3,3,3,3,4,4,4,4,4,4,4,4,4,4,5,5,5,5,5,5,5,5,5,5,6,6,6,6,6,6,6,6,6,6,7,7,7,7,7,7,7,7,7,7,8,8,8,8,8,8,8,8,8,8,9,9,9,9,9,9,9,9,9,9,10,10,10,10,10,10,10,10,10,10,11,11,11,11,11,11,11,11,11,11,12,12,12,12,12,12,12,12,12,12,13,13,13,13,13,13,13,13,13,13,14,14,14,14,14,14,14,14,14,14,15,15,15,15,15,15,15,15,15,15,1,1,1,1,1,1,1,1,1,1,2,2,2,2,2,2,2,2,2,2,3,3,3,3,3,3,3,3,3,3,4,4,4,4,4,4,4,4,4,4,5,5,5,5,5,5,5,5,5,5,6,6,6,6,6,6,6,6,6,6,7,7,7,7,7,7,7,7,7,7,8,8,8,8,8,8,8,8,8,8,9,9,9,9,9,9,9,9,9,9,10,10,10,10,10,10,10,10,10,10,11,11,11,11,11,11,11,11,11,11,12,12,12,12,12,12,12,12,12,12,13,13,13,13,13,13,13,13,13,13,14,14,14,14,14,14,14,14,14,14,15,15,15,15,15,15,15,15,15,15),

# the transect-year corresponding to each row in the "detected" matrix below
transect.year=c(1,1,1,1,1,1,1,1,1,1,2,2,2,2,2,2,2,2,2,2,3,3,3,3,3,3,3,3,3,3,4,4,4,4,4,4,4,4,4,4,5,5,5,5,5,5,5,5,5,5,6,6,6,6,6,6,6,6,6,6,7,7,7,7,7,7,7,7,7,7,8,8,8,8,8,8,8,8,8,8,9,9,9,9,9,9,9,9,9,9,10,10,10,10,10,10,10,10,10,10,11,11,11,11,11,11,11,11,11,11,12,12,12,12,12,12,12,12,12,12,13,13,13,13,13,13,13,13,13,13,14,14,14,14,14,14,14,14,14,14,15,15,15,15,15,15,15,15,15,15,16,16,16,16,16,16,16,16,16,16,17,17,17,17,17,17,17,17,17,17,18,18,18,18,18,18,18,18,18,18,19,19,19,19,19,19,19,19,19,19,20,20,20,20,20,20,20,20,20,20,21,21,21,21,21,21,21,21,21,21,22,22,22,22,22,22,22,22,22,22,23,23,23,23,23,23,23,23,23,23,24,24,24,24,24,24,24,24,24,24,25,25,25,25,25,25,25,25,25,25,26,26,26,26,26,26,26,26,26,26,27,27,27,27,27,27,27,27,27,27,28,28,28,28,28,28,28,28,28,28,29,29,29,29,29,29,29,29,29,29,30,30,30,30,30,30,30,30,30,30,31,31,31,31,31,31,31,31,31,31,32,32,32,32,32,32,32,32,32,32,33,33,33,33,33,33,33,33,33,33,34,34,34,34,34,34,34,34,34,34,35,35,35,35,35,35,35,35,35,35,36,36,36,36,36,36,36,36,36,36,37,37,37,37,37,37,37,37,37,37,38,38,38,38,38,38,38,38,38,38,39,39,39,39,39,39,39,39,39,39,40,40,40,40,40,40,40,40,40,40,41,41,41,41,41,41,41,41,41,41,42,42,42,42,42,42,42,42,42,42,43,43,43,43,43,43,43,43,43,43,44,44,44,44,44,44,44,44,44,44,45,45,45,45,45,45,45,45,45,45),

# whether frogs detected in each of 3 surveys of each 10-m segment of each transect each year
# NA indicates that A1 was used for training in 2012 and that only two surveys done in 2012 and 2015
detected=structure(.Data=c(
NA, NA, NA,
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)